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Computational Molecular Evolution

Author: Ziheng Yang
Publisher: Oxford University Press
ISBN: 0198566999
Size: 48.76 MB
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This book describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes.

The Evolution And Emergence Of Rna Viruses

Author: Edward C. Holmes
Publisher: Oxford University Press
ISBN: 0199211124
Size: 16.81 MB
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While the study of viral evolution has developed rapidly in the last 30 years, little attention has been directed toward linking the mechanisms of viral evolution to the epidemiological outcomes of these processes. This book intends to fill this gap by considering the patterns and processes of viral evolution at all its spatial and temporal scales.

Inferring Phylogenies

Author: Joseph Felsenstein
Publisher: Sinauer Associates Incorporated
ISBN: 9780878931774
Size: 55.28 MB
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Phylogenies, or evolutionary trees, are the basic structures necessary to think about and analyze differences between species. Statistical, computational, and algorithmic work in this field has been ongoing for four decades now, and there have been great advances in understanding. Yet no book has summarized this work. Inferring Phylogenies does just that in a single, compact volume. Phylogenies are inferred with various kinds of data. This book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites.

Molecular Evolution

Author: Ziheng Yang
Publisher: Oxford University Press
ISBN: 0199602603
Size: 36.53 MB
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"Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. The flood of genomic data has generated an acute need for powerful statistical methods and efficient computational algorithms to enable their effective analysis and interpretation. This advanced textbook is aimed at graduate level students and professional researchers (both empiricists and theoreticians) in the fields of bioinformatics and computational biology, statistical genomics, evolutionary biology, molecular systematics, and population genetics. It will also be of relevance and use to a wider audience of applied statisticians, mathematicians, and computer scientists working in computational biology."--back cover.


Author: Charles Semple
Publisher: Oxford University Press on Demand
ISBN: 9780198509424
Size: 61.45 MB
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Phylogenetic trees and networks are widely used throughout evolutionary biology, epidemiology, and ecology to infer the historical relationships between species through inherited characteristics. This work discusses the mathematics that underlies the reconstruction and analysis of these phylogenetic trees.

Introduction To Evolutionary Genomics

Author: Naruya Saitou
Publisher: Springer Science & Business Media
ISBN: 1447153049
Size: 55.90 MB
Format: PDF
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This book is the first of its kind to explain the fundamentals of evolutionary genomics. The comprehensive coverage includes concise descriptions of a variety of genome organizations, a thorough discussion of the methods used, and a detailed review of genome sequence processing procedures. The opening chapters also provide the necessary basics for readers unfamiliar with evolutionary studies. Features: introduces the basics of molecular biology, DNA replication, mutation, phylogeny, neutral evolution, and natural selection; presents a brief evolutionary history of life from the primordial seas to the emergence of humans; describes the genomes of prokaryotes, eukaryotes, vertebrates, and humans; reviews methods for genome sequencing, phenotype data collection, homology searches and analysis, and phylogenetic tree and network building; discusses databases of genome sequences and related information, evolutionary distances, and population genomics; provides supplementary material at an associated website.

Evolutionary Ecology

Author: Anne E. Magurran
Publisher: Oxford University Press on Demand
ISBN: 9780198527862
Size: 42.23 MB
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The Trinidadian guppy represents a uniguely tractable vertebrate system, which has raised key questions in evolutionary ecology and supplied many of the answers. This work discusses this study and incorporates significant new findings and insights.

Games Of Life

Author: Karl Sigmund
Publisher: Courier Dover Publications
ISBN: 0486812898
Size: 56.28 MB
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Accessible, informative, and enjoyable treatment discusses the application of the ideas and methods of game theory and mathematical modeling to such areas as evolution, sex, animal behavior, and aggression. "Excellent." — Nature

Learning And Intelligent Optimization Designing Implementing And Analyzing Effective Heuristics

Author: Thomas Stützle
Publisher: Springer Science & Business Media
ISBN: 3642111688
Size: 59.65 MB
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This book constitutes the thoroughly refereed post-conference proceedings of the Third International Conference on Learning and Intelligent Optimization, LION 2009 III, held in Trento, Italy, in January 2009. The 15 revised full papers, one extended abstract and two poster sessions were carefully reviewed and selected from 86 submissions for inclusion in the book. The papers cover current issues of stochastic local search methods and meta-heuristics, hybridizations of constraint and mathematical programming with meta-heuristics, supervised, unsupervised and reinforcement learning applied to heuristic search, reactive search (online self-tuning methods), algorithm portfolios and off-line tuning methods, algorithms for dynamic, stochastic and multi-objective problems, interface(s) between discrete and continuous optimization, experimental analysis and modeling of algorithms, theoretical foundations, parallelization of optimization algorithms, memory-based optimization, prohibition-based methods (tabu search), memetic algorithms, evolutionary algorithms, dynamic local search, iterated local search, variable neighborhood search and swarm intelligence methods (ant colony optimization, particle swarm optimization etc.).


Author: Christoph Bleidorn
Publisher: Springer
ISBN: 3319540645
Size: 60.67 MB
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This unique textbook provides a clear and concise overview of the key principles of the complex field of phylogenomics, with a particular focus on sequencing technologies that are crucial to studying and understanding interrelations in evolutionary genomics. It includes chapters dedicated to the analysis of nucleotide sequences using assembling and alignment methods and also discusses the main strategies for phylogenetic studies, systematic errors and their correction. This highly readable textbook is intended for graduate students and young researchers with an interest in phylogenetics and evolutionary developmental biology.