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Estimating Species Trees

Author: L. Lacey Knowles
Publisher: John Wiley & Sons
ISBN: 1118211405
Size: 48.84 MB
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Recent computational and modeling advances have produced methods for estimating species trees directly, avoiding the problems and limitations of the traditional phylogenetic paradigm where an estimated gene tree is equated with the history of species divergence. The overarching goal of the volume is to increase the visibility and use of these new methods by the entire phylogenetic community by specifically addressing several challenges: (i) firm understanding of the theoretical underpinnings of the methodology, (ii) empirical examples demonstrating the utility of the methodology as well as its limitations, and (iii) attention to technical aspects involved in the actual software implementation of the methodology. As such, this volume will not only be poised to become the quintessential guide to training the next generation of researchers, but it will also be instrumental in ushering in a new phylogenetic paradigm for the 21st century.


Author: Christoph Bleidorn
Publisher: Springer
ISBN: 3319540645
Size: 36.95 MB
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This unique textbook provides a clear and concise overview of the key principles of the complex field of phylogenomics, with a particular focus on sequencing technologies that are crucial to studying and understanding interrelations in evolutionary genomics. It includes chapters dedicated to the analysis of nucleotide sequences using assembling and alignment methods and also discusses the main strategies for phylogenetic studies, systematic errors and their correction. This highly readable textbook is intended for graduate students and young researchers with an interest in phylogenetics and evolutionary developmental biology.

Phylogenomic Data Acquisition

Author: W. Bryan Jennings
Publisher: CRC Press
ISBN: 1351722239
Size: 32.45 MB
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Phylogenomics is a rapidly growing field of study concerned with using genome-wide data—usually in the form of DNA sequence loci—to infer the evolution of genes, genomes, and the Tree of Life. Accordingly, this discipline connects many areas in biology including molecular and genomic evolution, systems biology, molecular systematics, phylogeography, conservation genetics, DNA barcoding, and others. With the advent of Next Generation Sequencing in addition to advances in computer hardware and software over the past decade, researchers can now generate unparalleled phylogenomic datasets that are helping to illuminate many areas in the life sciences. This book is an introduction to the principles and practices of gathering these data. Phylogenomic Data Acquisition: Principles and Practice is intended for a broad cross-section of biologists and anyone else interested in learning how to obtain phylogenomic data using the latest methods.

Molecular Phylogeny Of Microorganisms

Author: Aharon Oren
Publisher: Horizon Scientific Press
ISBN: 1904455670
Size: 75.10 MB
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An introduction to molecular phylogeny, this text provides an overview of the diversity, systematics and nomenclature of microbes in many branches of biological science.

Bayesian Evolutionary Analysis With Beast

Author: Alexei J. Drummond
Publisher: Cambridge University Press
ISBN: 1107019656
Size: 52.52 MB
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Covers theory, practice and programming in Bayesian phylogenetics with BEAST. The why, how and what of BEAST 2.