Download modelling in molecular biology natural computing series in pdf or read modelling in molecular biology natural computing series in pdf online books in PDF, EPUB and Mobi Format. Click Download or Read Online button to get modelling in molecular biology natural computing series in pdf book now. This site is like a library, Use search box in the widget to get ebook that you want.



Applications Of Membrane Computing

Author: Gabriel Ciobanu
Publisher: Springer Science & Business Media
ISBN: 9783540299370
Size: 30.44 MB
Format: PDF, Mobi
View: 7126
Download and Read
Membrane computing is a branch of natural computing which investigates computing models abstracted from the structure and functioning of living cells and from their interactions in tissues or higher-order biological structures. The models considered, called membrane systems (P systems), are parallel, distributed computing models, processing multisets of symbols in cell-like compartmental architectures. In many applications membrane systems have considerable advantages – among these are their inherently discrete nature, parallelism, transparency, scalability and nondeterminism. In dedicated chapters, leading experts explain most of the applications of membrane computing reported so far, in biology, computer science, computer graphics and linguistics. The book also contains detailed reviews of the software tools used to simulate P systems.

Modelling In Molecular Biology

Author: Gabriel Ciobanu
Publisher: Springer Science & Business Media
ISBN: 364218734X
Size: 57.18 MB
Format: PDF, ePub
View: 1638
Download and Read
Presents new mathematical and computational models as well as statistical methods for the solution of fundamental problems in the biosciences. Describes how to find regularities among empirical data, as well as conceptual models and theories.

Mobility In Process Calculi And Natural Computing

Author: Bogdan Aman
Publisher: Springer Science & Business Media
ISBN: 3642248675
Size: 14.47 MB
Format: PDF, ePub, Docs
View: 2044
Download and Read
The design of formal calculi in which fundamental concepts underlying interactive systems can be described and studied has been a central theme of theoretical computer science in recent decades, while membrane computing, a rule-based formalism inspired by biological cells, is a more recent field that belongs to the general area of natural computing. This is the first book to establish a link between these two research directions while treating mobility as the central topic. In the first chapter the authors offer a formal description of mobility in process calculi, noting the entities that move: links (π-calculus), ambients (ambient calculi) and branes (brane calculi). In the second chapter they study mobility in the framework of natural computing. The authors define several systems of mobile membranes in which the movement inside a spatial structure is provided by rules inspired by endocytosis and exocytosis. They study their computational power in comparison with the classical notion of Turing computability and their efficiency in algorithmically solving hard problems in polynomial time. The final chapter deals with encodings, establishing links between process calculi and membrane computing so that researchers can share techniques between these fields. The book is suitable for computer scientists working in concurrency and in biologically inspired formalisms, and also for mathematically inclined scientists interested in formalizing moving agents and biological phenomena. The text is supported with examples and exercises, so it can also be used for courses on these topics.

Discrete And Topological Models In Molecular Biology

Author: Nataša Jonoska
Publisher: Springer Science & Business Media
ISBN: 3642401937
Size: 80.86 MB
Format: PDF, Mobi
View: 983
Download and Read
Theoretical tools and insights from discrete mathematics, theoretical computer science, and topology now play essential roles in our understanding of vital biomolecular processes. The related methods are now employed in various fields of mathematical biology as instruments to "zoom in" on processes at a molecular level. This book contains expository chapters on how contemporary models from discrete mathematics – in domains such as algebra, combinatorics, and graph and knot theories – can provide perspective on biomolecular problems ranging from data analysis, molecular and gene arrangements and structures, and knotted DNA embeddings via spatial graph models to the dynamics and kinetics of molecular interactions. The contributing authors are among the leading scientists in this field and the book is a reference for researchers in mathematics and theoretical computer science who are engaged with modeling molecular and biological phenomena using discrete methods. It may also serve as a guide and supplement for graduate courses in mathematical biology or bioinformatics, introducing nontraditional aspects of mathematical biology.

Transactions On Computational Systems Biology Iii

Author: Corrado Priami
Publisher: Springer Science & Business Media
ISBN: 9783540308836
Size: 74.26 MB
Format: PDF, ePub, Docs
View: 2401
Download and Read
In the last few decades, advances in molecular biology and in the research - frastructure in this ?eld has given rise to the "omics" revolution in molecular biology, alongwiththeexplosionofdatabases: fromgenomicstotranscriptomics, proteomics, interactomics, and metabolomics. However, the huge amount of b- logicalinformationavailablehasleftabottleneckindataprocessing: information over?ow has called for innovative techniques for their visualization, modelling, interpretationandanalysis.The manyresultsfromthe ?eldsofcomputerscience andengineeringhavethenmetwithbiology, leadingto new, emergingdisciplines such as bioinformatics and systems biology. So, for instance, as the result of - plicationoftechniquessuchasmachinelearning, self-organizingmaps, statistical algorithms, clusteringalgorithmsandmulti-agentsystemstomodernbiology, we can actually model and simulate some functions of the cell (e.g., protein inter- tion, gene expression and gene regulation), make inferences from the molecular biology database, make connections among biological data, and derive useful predictions. Today, and more generally, two di?erent scenarios characterize the po- genomic era. On the one hand, the huge amount of datasets made available by biological research all over the world mandates for suitable techniques, tools and methods meant at modelling biological processes and analyzing biological sequences. On the other hand, biological systems work as the sources of a wide range of new computational models and paradigms, which are now ready to be applied in the context of computer-based systems.

Nanotechnology Science And Computation

Author: Junghuei Chen
Publisher: Springer Science & Business Media
ISBN: 3540302964
Size: 26.49 MB
Format: PDF, Mobi
View: 7536
Download and Read
Nanoscale science and computing is becoming a major research area as today's scientists try to understand the processes of natural and biomolecular computing. The field is concerned with the architectures and design of molecular self-assembly, nanostructures and molecular devices, and with understanding and exploiting the computational processes of biomolecules in nature. This book offers a unique and authoritative perspective on current research in nanoscale science, engineering and computing. Leading researchers cover the topics of DNA self-assembly in two-dimensional arrays and three-dimensional structures, molecular motors, DNA word design, molecular electronics, gene assembly, surface layer protein assembly, and membrane computing. The book is suitable for academic and industrial scientists and engineers working in nanoscale science, in particular researchers engaged with the idea of computing at a molecular level.

Dna Computing

Author: Gheorghe Paun
Publisher: Springer
ISBN: 9783540641964
Size: 62.54 MB
Format: PDF, Docs
View: 618
Download and Read
This is the first book on DNA computing, a molecular approach that may revolutionize computing-replacing silicon with carbon and microchips with DNA molecules. The book starts with an introduction to DNA computing, exploring the power of complementarity, the basics of biochemistry, and language and computation theory. It then brings the reader to the most advanced theories develop thus far in this emerging research area.

Advances In Petri Nets 1990

Author: Grzegorz Rozenberg
Publisher: Springer Science & Business Media
ISBN: 9783540538639
Size: 37.40 MB
Format: PDF, ePub, Docs
View: 282
Download and Read
This is the latest in a series of volumes presenting recent results on Petri nets to the general computer science community. The papers are selected and prepared to present results which are the most representative and significant for the development of the area.

Graph Transformations

Author: Hartmut Ehrig
Publisher: Springer Science & Business Media
ISBN: 3642159273
Size: 10.23 MB
Format: PDF, ePub
View: 171
Download and Read
This book constitutes the proceedings of the 5th International Conference on Graph Transformations, ICGT 2010, held in Twente, The Netherlands, in September/October 2010. The 22 papers presented were carefully reviewed and selected from 48 submissions. These papers mirror the wide-ranged ongoing research activities in the theory and application of graph transformation. They are concerned with different kinds of graph transformation approaches, their algebraic foundations, composition and analysis, the relation to logic, as well as various applications, mainly to model transformation and distributed systems.

Handbook Of Formal Languages

Author: Grzegorz Rozenberg
Publisher: Springer Science & Business Media
ISBN: 9783540604204
Size: 35.20 MB
Format: PDF, ePub, Mobi
View: 6305
Download and Read
This uniquely authoritative and comprehensive handbook is the first work to cover the vast field of formal languages, as well as their applications to the divergent areas of linguistics, dvelopmental biology, computer graphics, cryptology, molecular genetics, and programming languages. The work has been divided into three volumes.