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Spiking Neuron Models

Author: Wulfram Gerstner
Publisher: Cambridge University Press
ISBN: 9780521890793
Size: 44.97 MB
Format: PDF, ePub
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This is an introduction to spiking neurons for advanced undergraduate or graduate students. It can be used with courses in computational neuroscience, theoretical biology, neural modeling, biophysics, or neural networks. It focuses on phenomenological approaches rather than detailed models in order to provide the reader with a conceptual framework. No prior knowledge beyond undergraduate mathematics is necessary to follow the book. Thus it should appeal to students or researchers in physics, mathematics, or computer science interested in biology; moreover it will also be useful for biologists working in mathematical modeling.

Neuronal Dynamics

Author: Wulfram Gerstner
Publisher: Cambridge University Press
ISBN: 1107060834
Size: 49.89 MB
Format: PDF
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This solid introduction uses the principles of physics and the tools of mathematics to approach fundamental questions of neuroscience.

Introduction To Computational Genomics

Author: Nello Cristianini
Publisher: Cambridge University Press
ISBN: 1139460153
Size: 68.26 MB
Format: PDF, Kindle
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Where did SARS come from? Have we inherited genes from Neanderthals? How do plants use their internal clock? The genomic revolution in biology enables us to answer such questions. But the revolution would have been impossible without the support of powerful computational and statistical methods that enable us to exploit genomic data. Many universities are introducing courses to train the next generation of bioinformaticians: biologists fluent in mathematics and computer science, and data analysts familiar with biology. This readable and entertaining book, based on successful taught courses, provides a roadmap to navigate entry to this field. It guides the reader through key achievements of bioinformatics, using a hands-on approach. Statistical sequence analysis, sequence alignment, hidden Markov models, gene and motif finding and more, are introduced in a rigorous yet accessible way. A companion website provides the reader with Matlab-related software tools for reproducing the steps demonstrated in the book.

Computational Neuroscience

Author: Hanspeter Mallot
Publisher: Springer Science & Business Media
ISBN: 3319008617
Size: 25.16 MB
Format: PDF, Docs
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Computational Neuroscience - A First Course provides an essential introduction to computational neuroscience and equips readers with a fundamental understanding of modeling the nervous system at the membrane, cellular, and network level. The book, which grew out of a lecture series held regularly for more than ten years to graduate students in neuroscience with backgrounds in biology, psychology and medicine, takes its readers on a journey through three fundamental domains of computational neuroscience: membrane biophysics, systems theory and artificial neural networks. The required mathematical concepts are kept as intuitive and simple as possible throughout the book, making it fully accessible to readers who are less familiar with mathematics. Overall, Computational Neuroscience - A First Course represents an essential reference guide for all neuroscientists who use computational methods in their daily work, as well as for any theoretical scientist approaching the field of computational neuroscience.

Biophysics Of Computation

Author: Christof Koch
Publisher: Oxford University Press
ISBN: 0195181999
Size: 40.58 MB
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Neural network research often builds on the fiction that neurons are simple linear threshold units, completely neglecting the highly dynamic and complex nature of synapses, dendrites, and voltage-dependent ionic currents. Biophysics of Computation: Information Processing in Single Neurons challenges this notion, using richly detailed experimental and theoretical findings from cellular biophysics to explain the repertoire of computational functions available to single neurons. The author shows how individual nerve cells can multiply, integrate, or delay synaptic inputs and how information can be encoded in the voltage across the membrane, in the intracellular calcium concentration, or in the timing of individual spikes.Key topics covered include the linear cable equation; cable theory as applied to passive dendritic trees and dendritic spines; chemical and electrical synapses and how to treat them from a computational point of view; nonlinear interactions of synaptic input in passive and active dendritic trees; the Hodgkin-Huxley model of action potential generation and propagation; phase space analysis; linking stochastic ionic channels to membrane-dependent currents; calcium and potassium currents and their role in information processing; the role of diffusion, buffering and binding of calcium, and other messenger systems in information processing and storage; short- and long-term models of synaptic plasticity; simplified models of single cells; stochastic aspects of neuronal firing; the nature of the neuronal code; and unconventional models of sub-cellular computation.Biophysics of Computation: Information Processing in Single Neurons serves as an ideal text for advanced undergraduate and graduate courses in cellular biophysics, computational neuroscience, and neural networks, and will appeal to students and professionals in neuroscience, electrical and computer engineering, and physics.

The Book Of Genesis

Author: James M. Bower
Publisher: Springer Science & Business Media
ISBN: 1461216346
Size: 49.36 MB
Format: PDF, Kindle
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"The Book of GENESIS" is in two parts. Firstly, a collection of contributed articles describes projects created using the GENESIS system, and then a step-by-step tutorial explains how the software works and how best to manipulate it so as to achieve maximum use. As a result, this publication may be seen as a reference guide, a textbook for course use, and as a resource to which readers can turn for ideas on how to devise their own models and applications. The accompanying cross-platform CD-ROM contains the full source code for GENESIS and its graphical interface, XODUS; the GENESIS Reference Manual in hypertext, plain text and Postscript formats; numerous tutorial simulations and example simulation scripts, including all of those used in the book. As a bonus, also included on the CD are a number of items which are not part of the standard distribution of GENESIS. The GENESIS system will continue to be made available through the Cal Tech World Wide Web site, as well, at: www.bbb.caltech.edu/GENESIS.

Statistical Signal Processing For Neuroscience And Neurotechnology

Author: Karim G. Oweiss
Publisher: Academic Press
ISBN: 9780080962962
Size: 27.60 MB
Format: PDF
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This is a uniquely comprehensive reference that summarizes the state of the art of signal processing theory and techniques for solving emerging problems in neuroscience, and which clearly presents new theory, algorithms, software and hardware tools that are specifically tailored to the nature of the neurobiological environment. It gives a broad overview of the basic principles, theories and methods in statistical signal processing for basic and applied neuroscience problems. Written by experts in the field, the book is an ideal reference for researchers working in the field of neural engineering, neural interface, computational neuroscience, neuroinformatics, neuropsychology and neural physiology. By giving a broad overview of the basic principles, theories and methods, it is also an ideal introduction to statistical signal processing in neuroscience. A comprehensive overview of the specific problems in neuroscience that require application of existing and development of new theory, techniques, and technology by the signal processing community Contains state-of-the-art signal processing, information theory, and machine learning algorithms and techniques for neuroscience research Presents quantitative and information-driven science that has been, or can be, applied to basic and translational neuroscience problems

Matlab For Neuroscientists

Author: Pascal Wallisch
Publisher: Academic Press
ISBN: 0123838371
Size: 63.80 MB
Format: PDF, Docs
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MATLAB for Neuroscientists serves as the only complete study manual and teaching resource for MATLAB, the globally accepted standard for scientific computing, in the neurosciences and psychology. This unique introduction can be used to learn the entire empirical and experimental process (including stimulus generation, experimental control, data collection, data analysis, modeling, and more), and the 2nd Edition continues to ensure that a wide variety of computational problems can be addressed in a single programming environment. This updated edition features additional material on the creation of visual stimuli, advanced psychophysics, analysis of LFP data, choice probabilities, synchrony, and advanced spectral analysis. Users at a variety of levels—advanced undergraduates, beginning graduate students, and researchers looking to modernize their skills—will learn to design and implement their own analytical tools, and gain the fluency required to meet the computational needs of neuroscience practitioners. The first complete volume on MATLAB focusing on neuroscience and psychology applications Problem-based approach with many examples from neuroscience and cognitive psychology using real data Illustrated in full color throughout Careful tutorial approach, by authors who are award-winning educators with strong teaching experience

Computational Neuroscience In Epilepsy

Author: Ivan Soltesz
Publisher: Academic Press
ISBN: 9780080559537
Size: 79.40 MB
Format: PDF, Docs
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Epilepsy is a neurological disorder that affects millions of patients worldwide and arises from the concurrent action of multiple pathophysiological processes. The power of mathematical analysis and computational modeling is increasingly utilized in basic and clinical epilepsy research to better understand the relative importance of the multi-faceted, seizure-related changes taking place in the brain during an epileptic seizure. This groundbreaking book is designed to synthesize the current ideas and future directions of the emerging discipline of computational epilepsy research. Chapters address relevant basic questions (e.g., neuronal gain control) as well as long-standing, critically important clinical challenges (e.g., seizure prediction). Computational Neuroscience in Epilepsy should be of high interest to a wide range of readers, including undergraduate and graduate students, postdoctoral fellows and faculty working in the fields of basic or clinical neuroscience, epilepsy research, computational modeling and bioengineering. Covers a wide range of topics from molecular to seizure predictions and brain implants to control seizures Contributors are top experts at the forefront of computational epilepsy research Chapter contents are highly relevant to both basic and clinical epilepsy researchers

The Neuron Book

Author: Nicholas T. Carnevale
Publisher: Cambridge University Press
ISBN: 1139447831
Size: 18.36 MB
Format: PDF, ePub, Docs
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The authoritative reference on NEURON, the simulation environment for modeling biological neurons and neural networks that enjoys wide use in the experimental and computational neuroscience communities. This book shows how to use NEURON to construct and apply empirically based models. Written primarily for neuroscience investigators, teachers, and students, it assumes no previous knowledge of computer programming or numerical methods. Readers with a background in the physical sciences or mathematics, who have some knowledge about brain cells and circuits and are interested in computational modeling, will also find it helpful. The NEURON Book covers material that ranges from the inner workings of this program, to practical considerations involved in specifying the anatomical and biophysical properties that are to be represented in models. It uses a problem-solving approach, with many working examples that readers can try for themselves.